Basic Information
VIS ID
TVIS44017661
Fusion event
HTLV-1-MIR548AN integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr13
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
100010206/99357952 (Hg38)
End
100010206/99357952 (Hg38)
Orient
-
Location type
ncRNA_intronic
Fragile sites / regions
FRA13D
Target gene
MIR548AN
Nearest miRNA
hsa-mir-1297/Upstream/1724; hsa-mir-1267/Downstream/285107;
Nearest TSS
ENST00000623511/Upstream/43244; ENST00000474510/Downstream/9835;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/156654, chr13-CpG: 20/Downstream/119081
Upstream sequence
CTTAACTCAGCAATATGCCTCACTATGTCTTTGTCCATTCAGttatccattttgcaactgtttcttgagtgcttgcatatgccaggtcgtacaggaggcc
Downstream sequence
aggtctacaaacaggacaagatggagaatcacagtccccgtggagctaataggctgttgtgagattcaggccggttagcctgcaagtgaaatgggatgtg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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