Basic Information
VIS ID
TVIS44017681
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
23592384/23123175 (Hg38)
End
23592384/23123175 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4707/Upstream/166146; hsa-mir-1185-1/Downstream/265421;
Nearest TSS
ENST00000550708/Upstream/3559; ENST00000498441/Downstream/6968;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/27660, chr14-CpG: 33/Downstream/162737
Nearby gene
SLC7A8(-2120) ;
Upstream sequence
TCCCTGAAGTCAGAGCATGTGAAACTCCTAGGATTAAAGTGACTGGCAGGGTTAAGACGGGAAATGGCCAGGTTAAAAGTAAATGTTTGTTGCCCAGGAG
Downstream sequence
GAGACCCACATTTGCCCATTTGACCAGGTTGAAAAGATCAGCAGGTGTCACAGAAAGAGAAGGTGCTCCTGAAGGACAAGTGCCTTCATGGAGTAGAAGG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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