Basic Information
VIS ID
TVIS44017686
Fusion event
HTLV-1-LOC728755 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
27871412/27402206 (Hg38)
End
27871412/27402206 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC728755
Nearest miRNA
hsa-mir-208a/Upstream/493481; hsa-mir-1185-1/Downstream/230999;
Nearest TSS
ENST00000550708/Upstream/529043; ENST00000555350/Downstream/210382;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/1196934, chr14-CpG: 203/Downstream/1363477
Nearby gene
LINC00645(No orient, 210382)
Upstream sequence
GACATTTCTATAGTCATTTCTTCAAATCTACTACAGAACCTGTTCTTGAATACAGATTTTCCACTCTATTCCACTGCCAGTGTTTAAATGATCACAAATT
Downstream sequence
AGCTTTTACTTAGagtggaagtggcaccactcaccatcacccctcatgaccctgtggtaaaatttttgcttcctgtttctgcaacattatgttctgctgg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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