Basic Information
VIS ID
TVIS44017709
Fusion event
HTLV-1-chr14 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
48702639/48233436 (Hg38)
End
48702639/48233436 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/472332; hsa-mir-1185-1/Downstream/1732963;
Nearest TSS
ENST00000550708/Upstream/438344; ENST00000557531/Downstream/258331;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/557050, chr14-CpG: 30/Downstream/1352496
Nearby gene
LINC00648(No orient, 438422)
Upstream sequence
AAAGAACATTGTATCTCTTGGTTCACAAATCGTAAATCTGCATTCAATAAACATTGAGCCTATGCTGCCTACACAGCAGACGATCAATGAAGTACTACAC
Downstream sequence
AGATCTAATCATGTACTAAGAAAGAATTAGGCAAGAGTAATAGAAGTTGATTTTTGTAGTTCCTTAGATACGTATTGCATATAACAAAAATTTACCAAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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