VISDB Viral Integration Site DataBase

VIS ID

TVIS44017762

Fusion event

HTLV-1-CALM1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr14

Cytoband

q32.11

Reference genome

Start

End

90864059/90397715 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-let-7f-5p ; hsa-mir-129-5p ; hsa-mir-450b-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-579-3p ; hsa-mir-595 ; hsa-mir-548c-3p ; hsa-mir-648 ; hsa-mir-664a-3p ; hsa-mir-4760-3p ; hsa-mir-664b-3p ; hsa-mir-548aw ; hsa-let-7c-3p ; hsa-mir-340-5p ; hsa-mir-3123 ; hsa-mir-4311 ; hsa-mir-4729 ; hsa-mir-539-5p ; hsa-mir-586 ; hsa-mir-196a-5p ; hsa-mir-196b-5p ; hsa-mir-495-5p ; hsa-mir-1305 ; hsa-mir-1250-3p ; hsa-mir-511-3p ; hsa-mir-548a-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548ar-3p ; hsa-mir-548az-3p ; hsa-mir-493-3p ; hsa-mir-142-3p ; hsa-mir-6867-5p ; hsa-mir-382-5p ; hsa-mir-3680-3p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-4696 ; hsa-mir-3163 ; hsa-mir-583 ; hsa-mir-1276 ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4639-5p ; hsa-mir-502-5p ; hsa-mir-5589-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-4662a-3p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-5696 ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-1324 ; hsa-mir-382-3p ; hsa-mir-4538 ; hsa-mir-4453 ; hsa-mir-6882-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-5582-3p ; hsa-mir-3148 ; hsa-mir-4668-5p ; hsa-mir-4777-5p ; hsa-mir-518d-5p ; hsa-mir-518e-5p ; hsa-mir-518f-5p ; hsa-mir-519a-5p ; hsa-mir-519b-5p ; hsa-mir-519c-5p ; hsa-mir-520c-5p ; hsa-mir-520g-5p ; hsa-mir-522-5p ; hsa-mir-523-5p ; hsa-mir-526a ; hsa-mir-625-5p ; hsa-mir-6795-5p ; hsa-mir-6873-5p ; hsa-mir-6887-5p

Nearest miRNA

hsa-mir-1260a/Upstream/13131425; hsa-mir-1185-1/Downstream/3550511;

Nearest TSS

Nearest CpG islands

chr14-CpG: 175/Target, None/Upstream, None/Downstream

Upstream sequence

CGGGCACTAGAcccccccccccggcccgccccTCCCCACCCCGCTTCTCCGCCGGCGCGAAGGTGGCAGGTCGGGCGGGCAGTGGAGAATGAATGGGCTG

Downstream sequence

GAGCTGGCCGGTGGCGCACATTGTTCCGGCCGGGTGTTGAGGGGCGCAGTCAGCGCCCGCCACCTCCCCACTTTGGCCGGCCCTGCTGGGCGCCCTCCCT