Basic Information
VIS ID
TVIS44017769
Fusion event
HTLV-1-SNHG10 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.13
Reference genome
GRCh37/hg19
Start
95999970/95533633 (Hg38)
End
95999970/95533633 (Hg38)
Orient
+
Location type
ncRNA_exonic
Target gene
SNHG10
Nearest miRNA
hsa-mir-1260a/Upstream/395647; hsa-mir-1185-1/Downstream/4575786;
Nearest TSS
ENST00000550708/Upstream/130; ENST00000331334/Downstream/612;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/16437, chr14-CpG: 132/Downstream/706
Upstream sequence
CAGGCATGCCTCAGCTTCCTCTGGAGTATGCTTTTTCTGCAAGTCTGGTGTGCTCGAGGGTACCACCAACCCTGTGCGGCTCCAAGACTACAGATTATGT
Downstream sequence
AGCAAGTCCACTGGTCCTGCTCTTCCGGATTTATTCTTCCCGCCAATAGgagcacttaccacgttccaagcatcgtcctaggcactgaggatacagcagt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate