Basic Information
VIS ID
TVIS44017772
Fusion event
HTLV-1-LINC01550 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr14
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
98434269/97967932 (Hg38)
End
98434269/97967932 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01550
Nearest miRNA
hsa-mir-1260a/Upstream/2829946; hsa-mir-1185-1/Downstream/2141487;
Nearest TSS
ENST00000550708/Upstream/178676; ENST00000557072/Downstream/10114;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/748323, chr14-CpG: 53/Downstream/1150136
Upstream sequence
TTAAGGGCTGGTTCCCAATGACTGACTCTTGAAAAATACTAGACCTTCTTCCATTAGCAAAATGAAACAAACAATACCATTTAAACTTGACCATAATGTG
Downstream sequence
TTTGAAATCTCATTTTCTCTTAACCAAATGTCCTCTACTTTTTTAGTTGAACAACTTAAACTAGAAATTTACTATACAAGTTATAAGTCTGAGGTATTAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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