Basic Information
VIS ID
TVIS44017796
Fusion event
HTLV-1-LOC100507480 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
36340174/36047973 (Hg38)
End
36340174/36047973 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC100507480
Nearest miRNA
hsa-mir-1233-1/Upstream/121050; hsa-mir-10393/Downstream/924848;
Nearest TSS
ENST00000557528/Upstream/1891; ENST00000561236/Downstream/204284;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/501659, chr15-CpG: 35/Downstream/531285
Nearby gene
MIR4510(+121050) ;
Upstream sequence
acagcagaggggacaaactccagacgtgccaccttaagagctgtaacactcaccgcgacggtccgcggcttcattcttgaagtcagtgagaccaagaacc
Downstream sequence
caccaattctggacccaATATGTGTTCCTTCCATTGAGAAATGTTAAGTTACAATGTGTGGGCTGCCTTACTGTTTTTACTTTTTCAGGCTTCTCATCCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate