Basic Information
VIS ID
TVIS44017799
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
39751219/39459018 (Hg38)
End
39751219/39459018 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/2486117; hsa-mir-10393/Downstream/2232567;
Nearest TSS
ENST00000557528/Upstream/31823; ENST00000558846/Downstream/13685;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/893561, chr15-CpG: 109/Downstream/121308
Nearby gene
THBS1(+122061) ;
Nearest cancer related gene
THBS1(TSG, +122061) ;
Upstream sequence
tcgcatctaaccatttttgtttttactgcaattgtttttggcttgttatgaaatttttgccaggtcctatatccagaatggtatttcctaggttatcttc
Downstream sequence
caggatttttatacttttacgtttaacatctaaacctttaatccatattcagttgatttttgtatatggtccagtttcaatcttctgcacatggctagcc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate