Basic Information
VIS ID
TVIS44017802
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
46268631/45976433 (Hg38)
End
46268631/45976433 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10393/Upstream/543304; hsa-mir-11181/Downstream/3192637;
Nearest TSS
ENST00000557528/Upstream/271238; ENST00000559148/Downstream/716855;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/271227, chr15-CpG: 96/Downstream/1207739
Nearby gene
SQOR(+285139) ;
Upstream sequence
TAGCTGAATCACAAGAATATTTGGCCACCTGTATATCTGTAACCTGGGTATTGTCTTGTGAGTCTTAATGTCCCCTATATGTAAGCTTGCCATAGAGAGT
Downstream sequence
GAAACTGACAGCAGAGTTGTCTGACTTTGAATGCACCACACTGGATAGGCAGTGGCTAGTTGGGCTTGTAGGACCCTAGGGAGATCAACAGTGCTAGACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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