VISDB Viral Integration Site DataBase

VIS ID

TVIS44017810

Fusion event

HTLV-1-TRPM7 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr15

Cytoband

q21.2

Reference genome

Start

End

50849929/50557732 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-9-5p ; hsa-mir-21-5p ; hsa-mir-10a-5p ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4768-3p ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-383-5p ; hsa-mir-3185 ; hsa-mir-196b-3p ; hsa-mir-4499 ; hsa-mir-4494 ; hsa-mir-5580-3p ; hsa-mir-129-5p ; hsa-mir-8055 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-6828-3p ; hsa-mir-6071 ; hsa-mir-6879-3p ; hsa-mir-6876-3p ; hsa-mir-626 ; hsa-mir-4524a-3p ; hsa-mir-6773-3p ; hsa-mir-3692-5p ; hsa-mir-93-3p ; hsa-mir-6874-3p ; hsa-mir-148b-5p ; hsa-mir-4797-5p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6774-5p ; hsa-mir-4772-3p ; hsa-mir-635 ; hsa-mir-1304-3p ; hsa-mir-645 ; hsa-mir-6890-3p ; hsa-mir-665 ; hsa-mir-6771-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-302a-5p ; hsa-mir-6746-5p ; hsa-mir-4649-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-34b-3p ; hsa-mir-6771-3p ; hsa-mir-4776-3p ; hsa-mir-744-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-5590-5p ; hsa-mir-4423-5p ; hsa-mir-6501-5p ; hsa-mir-1290 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-4716-5p ; hsa-mir-3159

Nearest miRNA

hsa-mir-10393/Upstream/197322; hsa-mir-11181/Downstream/684458;

Nearest TSS

Nearest CpG islands

None/Target, chr15-CpG: 55/Upstream/133103, chr15-CpG: 84/Downstream/128414

Upstream sequence

TTGCAGAAAAGAATTCCACATCttttttttgagacagagttctgctgtcacccaggctggagtgcagtggcagcaatctaggctcactgcaacctccacc

Downstream sequence

tcttgggttcaagcaattctcctgcctcagcctcctgagtagctgggcctacaggcacgcgccaccacacccagataatttttgtatttttagtagagac