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VISDB
Viral Integration Site DataBase
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TVIS44017857
Basic Information
VIS ID
TVIS44017857
Fusion event
HTLV-1-chr15 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr15
Cytoband
q26.2
Reference genome
GRCh37/hg19
Start
96626111/96082882 (Hg38)
End
96626111/96082882 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369212
;
LOC112268156
Nearest miRNA
hsa-mir-10393/Upstream/3178407; hsa-mir-1302-10/Downstream/250379;
Nearest TSS
ENST00000557528/Upstream/18525;
ENST00000560176/Downstream/1702;
Nearest CpG islands
None/Target,
chr15-CpG: 55/Upstream/755789
,
chr15-CpG: 151/Downstream/238770
Nearby gene
NR2F2-AS1
(No orient, 44478)
Upstream sequence
AAATGTGTTGTATGTTAAAGAAAGAATTGTCTTACTTCCCTTACTTCCCCTTGTGGCttttattatttaatatttaattaaatttaaaaCATCTTAATTG
Downstream sequence
ATAGCCTGTGTGTACATACTTTAACCAACCACATTATTTTATTATATTATTTCAGAAAATGAAAAATATCTATTATGATAAAATATGGCTCTTATTGCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Sample Information
×
Sample name
HAM/TSP#1
Sample type
Nontumor
Gender
Female
CpG Island Information
×
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