Basic Information
VIS ID
TVIS44017877
Fusion event
HTLV-1-HS3ST4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p12.1
Reference genome
GRCh37/hg19
Start
25880460/25869139 (Hg38)
End
25880460/25869139 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA16E
Target gene
HS3ST4
Nearest miRNA
hsa-mir-1225/Upstream/1665908; hsa-mir-11401/Downstream/156098;
Nearest TSS
ENST00000527434/Upstream/177113; ENST00000475436/Downstream/17607;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/175829, chr16-CpG: 34/Downstream/1240551
Upstream sequence
TTTTGTTAAATGGTATTTAATGTAAGAATGATAGCAGTAATTACCAAAGGATCCTGGGGTACCAGGAAGGAGCTCAATGAGAAATGGTTTCAGAGGCAGC
Downstream sequence
CATCTGCTACTCGGGAGTGGGAGGGGTTGGCATCCAAGTCATAGCCTCAGGGACCAGGCTGGCGATTTGCTCTCCGTGGAGAAACAGCATTGGTGGTGTG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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