Basic Information
VIS ID
TVIS44017883
Fusion event
HTLV-1-SNX29P2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
29320513/29309192 (Hg38)
End
29320513/29309192 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
SNX29P2
Nearest miRNA
hsa-mir-1225/Upstream/350531; hsa-mir-11401/Downstream/289987;
Nearest TSS
ENST00000527434/Upstream/36972; ENST00000567248/Downstream/88504;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10102, chr16-CpG: 146/Downstream/144840
Upstream sequence
gcccatgccctctgcctatgccccctcatcttgtgccctctgcccatctcttctgtccatccctctgcccatgccctctgcctgtgcctcccTGCCTGTG
Downstream sequence
CCCTCTGCCTGTGCCCCCTCAGCTCGTGCCCTCTGCCCGTCCCTCTGCCAGTCCCCTCTGCCTGTGCCAGTTCAGCTTGGACCACGCTGGGCGTGGGTGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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