VISDB Viral Integration Site DataBase

VIS ID

TVIS44017885

Fusion event

HTLV-1-ALDOA integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

30080149/30068828 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-122-5p ; hsa-mir-1301-3p ; hsa-mir-615-3p ; hsa-mir-92b-3p ; hsa-mir-196b-5p ; hsa-mir-324-3p ; hsa-mir-324-5p ; hsa-mir-23b-3p ; hsa-mir-1260b ; hsa-mir-5096 ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-6069 ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-645 ; hsa-mir-4787-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-4468 ; hsa-mir-6793-3p ; hsa-mir-935 ; hsa-mir-5009-5p ; hsa-mir-8058 ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-3134 ; hsa-mir-8082 ; hsa-mir-4534 ; hsa-mir-1179 ; hsa-mir-374c-3p ; hsa-mir-640 ; hsa-mir-4279 ; hsa-mir-378a-5p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-6845-3p ; hsa-mir-6777-3p ; hsa-mir-3653-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-4639-3p ; hsa-mir-125a-3p ; hsa-mir-5682 ; hsa-mir-585-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-3622b-5p ; hsa-mir-4443 ; hsa-mir-665 ; hsa-mir-7977 ; hsa-mir-4693-5p ; hsa-mir-7847-3p ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6720-3p ; hsa-mir-7114-5p ; hsa-mir-668-5p ; hsa-mir-5690 ; hsa-mir-892a ; hsa-mir-4318 ; hsa-mir-4524a-3p ; hsa-mir-7110-3p ; hsa-mir-3615 ; hsa-mir-1304-3p ; hsa-mir-6812-3p ; hsa-mir-5007-5p ; hsa-mir-4797-5p ; hsa-mir-6738-3p ; hsa-mir-544a ; hsa-mir-5001-3p ; hsa-mir-4727-5p ; hsa-mir-6794-3p ; hsa-mir-873-5p ; hsa-mir-493-3p ; hsa-mir-627-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6876-5p ; hsa-mir-483-3p ; hsa-mir-4476 ; hsa-mir-6165 ; hsa-mir-6869-5p ; hsa-mir-3157-5p ; hsa-mir-1976 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4691-3p ; hsa-mir-3622b-3p ; hsa-mir-3622a-3p ; hsa-mir-5571-5p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-433-3p ; hsa-mir-150-5p ; hsa-mir-186-3p ; hsa-mir-498 ; hsa-mir-4772-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-4684-5p ; hsa-mir-103a-2-5p ; hsa-mir-942-5p ; hsa-mir-6728-3p ; hsa-mir-1251-5p ; hsa-mir-517-5p ; hsa-mir-554 ; hsa-mir-1225-3p ; hsa-mir-1233-5p ; hsa-mir-1273h-5p ; hsa-mir-129-1-3p ; hsa-mir-129-2-3p ; hsa-mir-149-3p ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-200a-5p ; hsa-mir-200b-5p ; hsa-mir-30b-3p ; hsa-mir-335-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4481 ; hsa-mir-454-5p ; hsa-mir-4687-5p ; hsa-mir-4695-5p ; hsa-mir-4728-3p ; hsa-mir-4728-5p ; hsa-mir-4745-5p ; hsa-mir-505-5p ; hsa-mir-5193 ; hsa-mir-6087 ; hsa-mir-6515-3p ; hsa-mir-676-5p ; hsa-mir-6778-5p ; hsa-mir-6779-3p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6791-3p ; hsa-mir-6799-5p ; hsa-mir-6805-5p ; hsa-mir-6829-3p ; hsa-mir-6881-3p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-877-3p ; hsa-mir-1227-3p ; hsa-mir-1234-3p ; hsa-mir-1244 ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-1281 ; hsa-mir-1470 ; hsa-mir-18a-3p ; hsa-mir-3145-5p ; hsa-mir-3925-3p ; hsa-mir-4252 ; hsa-mir-4290 ; hsa-mir-4485-5p ; hsa-mir-455-3p ; hsa-mir-4701-3p ; hsa-mir-4703-3p ; hsa-mir-4738-3p ; hsa-mir-508-5p ; hsa-mir-5089-5p ; hsa-mir-510-3p ; hsa-mir-542-3p ; hsa-mir-552-3p ; hsa-mir-619-5p ; hsa-mir-622 ; hsa-mir-6499-3p ; hsa-mir-6506-5p ; hsa-mir-6516-5p ; hsa-mir-653-5p ; hsa-mir-661 ; hsa-mir-6736-5p ; hsa-mir-6776-5p ; hsa-mir-6807-5p ; hsa-mir-6836-3p ; hsa-mir-6850-3p ; hsa-mir-6861-5p ; hsa-mir-6871-3p ; hsa-mir-6890-3p ; hsa-mir-7107-5p

Nearest miRNA

hsa-mir-1225/Upstream/469563; hsa-mir-11401/Downstream/435091;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/2277, chr16-CpG: 67/Downstream/7087

Upstream sequence

GAACCCAACCAGAGCAGGTTTGGGTGCTGGGAGGAGTGGAAACCACATGCCCCTCCCCACCGTGCTCTGACCCCTTCCTCTTCTCTTAGGGTTGGATGGG

Downstream sequence

CTGTCTGAGCGCTGTGCCCAGTACAAGAAGGACGGAGCTGACTTCGCCAAGTGGCGTTGTGTGCTGAAGATTGGGGAACACACCCCCTCAGCCCTCGCCA