Basic Information
VIS ID
TVIS44017886
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
3069898/3019897 (Hg38)
End
3069898/3019897 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/487892; hsa-mir-11401/Downstream/465484;
Nearest TSS
ENST00000527434/Upstream/1452; ENST00000575836/Downstream/174;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1540, chr16-CpG: 93/Downstream/197
Nearby gene
TNFRSF12A(+415) ;
Nearest cancer related gene
TNFRSF12A(TSG, +415) ;
Upstream sequence
tcactctgtcgcccaggctggagtgtagtggcgcgatctcggctcactgcaacttctgcctcccgggttcaagagattctcctgcctcagcctcctgagt
Downstream sequence
agctcggattgcaggcgcgcgccaccacgcccggctaatttttgtatttcgagtagagacggcgtttcaccacgttggtcaggctgctctcgaactcctg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate