Basic Information
VIS ID
TVIS44017890
Fusion event
HTLV-1-chr16 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
31039560/31028239 (Hg38)
End
31039560/31028239 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/134254; hsa-mir-11401/Downstream/3135339;
Nearest TSS
ENST00000527434/Upstream/17578; ENST00000478150/Downstream/4650;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/17187, chr16-CpG: 99/Downstream/4793
Nearby gene
STX4(+4856) ;
Upstream sequence
gggtctcactatgtcgtccagactagtctcaaactcctgagctcaagcaatcctcctgcctcagcctcccaaagtgctgagattacaggcatgagccacc
Downstream sequence
atgcctagcTcaatatgtaaataaattagcaaaatatatggtatgtcagCTCCAAGTGGAGACACAAGAGATGGGTGTGAGCTGGCAAGGCTGATAGCCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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