VISDB Viral Integration Site DataBase

VIS ID

TVIS44017891

Fusion event

HTLV-1-STX4 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

p11.2

Reference genome

Start

End

31049652/31038331 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-22-3p ; hsa-mir-5684 ; hsa-mir-5688 ; hsa-mir-618 ; hsa-mir-495-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-128-2-5p ; hsa-mir-128-1-5p ; hsa-mir-3178 ; hsa-mir-6781-5p ; hsa-mir-4284 ; hsa-mir-24-3p ; hsa-mir-6847-3p ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-4787-5p ; hsa-mir-6499-5p ; hsa-mir-5787 ; hsa-mir-4505 ; hsa-mir-4252 ; hsa-mir-5186 ; hsa-mir-3130-3p ; hsa-mir-1273g-3p ; hsa-mir-5089-5p ; hsa-mir-675-5p ; hsa-mir-4466 ; hsa-mir-2861 ; hsa-mir-4731-5p ; hsa-mir-5589-5p ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-6778-3p ; hsa-mir-1254 ; hsa-mir-6506-5p ; hsa-mir-548q ; hsa-mir-619-5p ; hsa-mir-150-5p ; hsa-mir-939-3p ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-17-3p ; hsa-mir-1827 ; hsa-mir-3929 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-455-3p ; hsa-mir-4722-5p ; hsa-mir-4763-5p ; hsa-mir-485-5p ; hsa-mir-5588-3p ; hsa-mir-5690 ; hsa-mir-665 ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6808-5p ; hsa-mir-6884-5p ; hsa-mir-6893-5p ; hsa-mir-6894-3p ; hsa-mir-940

Nearest miRNA

hsa-mir-1225/Upstream/144346; hsa-mir-11401/Downstream/3125247;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/4157, chr16-CpG: 29/Downstream/3858

Upstream sequence

CCCCTCTGAGTCCTGTCCGTTTctcgacctcctgggctcaggtgatcctcctgcctcagcctcccgagtagctgggactataggtgcaagccactgcacc

Downstream sequence

ccgctTGCTGTGGCCCTTTCTGATTAAGGGCACCCTGAGGCCTCTAAGGGAATTAATTAGCCTGCCTGGAGTCACCCATCAGATTCCAGGCTGAGGGCTC