Basic Information
VIS ID
TVIS44017899
Fusion event
HTLV-1-ANKRD26P1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
46525353/46491441 (Hg38)
End
46525353/46491441 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
ANKRD26P1
Nearest miRNA
hsa-mir-1225/Upstream/12327768; hsa-mir-11401/Downstream/3801175;
Nearest TSS
ENST00000527434/Upstream/10704554; ENST00000569239/Downstream/92812;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/62467, chr16-CpG: 42/Downstream/129649
Upstream sequence
gaaaagaccaaatctacgtctgattggtgtacctgaaagtgacagggagaaaagaaccaagtttgaaaacactctgcaggatattatccaggagaacttc
Downstream sequence
tccaatgtaacaaggcagggcaacattcaaattcaggaaatacagagaatgccacaaagatactcctcgagaagagcaactccaagacacataattgtca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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