Basic Information
VIS ID
TVIS44017915
Fusion event
HTLV-1-LOC283856 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q13
Reference genome
GRCh37/hg19
Start
56152984/56119072 (Hg38)
End
56152984/56119072 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC283856
Nearest miRNA
hsa-mir-1225/Upstream/5376695; hsa-mir-11401/Downstream/126448;
Nearest TSS
ENST00000527434/Upstream/9535; ENST00000564102/Downstream/2843;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/285986, chr16-CpG: 152/Downstream/71588
Upstream sequence
ggcatctgccaccatggccagctaatttttgtatttttagtagagacagggtttcaccatgttagccaggctggtcttgaactcctgacctcaaatgata
Downstream sequence
tgcctgccttggcctcccaaagtgctgggattacaagcatgagccaccacaactggccttgcaattacttttcatggcaaaaactgcaattacttttgca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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