Basic Information
VIS ID
TVIS44017937
Fusion event
HTLV-1-COG4 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr16
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
70514999/70481096 (Hg38)
End
70514999/70481096 (Hg38)
Orient
-
Location type
Exonic
Fragile sites / regions
FRA16B
Target gene
COG4
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-18a-3p
Nearest miRNA
hsa-mir-1225/Upstream/450674; hsa-mir-11401/Downstream/6387840;
Nearest TSS
ENST00000527434/Upstream/3738; ENST00000564899/Downstream/1698;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/7753, chr16-CpG: 30/Downstream/42090
Upstream sequence
CTCATCCAGGCAGCTACAGGCGCAGCCTCTTGATATCTTCACTGCGGAAGTCTATCCGCAGGGCCAGCACCTGGCGCACTTCAGCAGGGGTGAGGCGCCA
Downstream sequence
CGTCAATGGGCCGGAATTGGGTCCCCAGTAATCGAGGATCTCGGTCACCTGTGGGGAAGGACATAGAGACCAGTCAGCAAGGTGGGGTTATTCTGAAAGA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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