VISDB Viral Integration Site DataBase

VIS ID

TVIS44017951

Fusion event

HTLV-1-GAN integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr16

Cytoband

q23.2

Reference genome

Start

End

81356030/81322425 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-3662 ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p ; hsa-mir-4781-3p ; hsa-mir-4713-5p ; hsa-mir-7977 ; hsa-mir-2116-3p ; hsa-mir-532-3p ; hsa-mir-150-5p ; hsa-mir-4639-3p ; hsa-mir-4457 ; hsa-mir-4731-3p ; hsa-mir-4801 ; hsa-mir-124-3p ; hsa-mir-340-5p ; hsa-mir-3117-5p ; hsa-mir-425-5p ; hsa-mir-3163 ; hsa-mir-548c-3p ; hsa-mir-186-3p ; hsa-mir-6871-3p ; hsa-mir-605-5p ; hsa-mir-600 ; hsa-mir-4279 ; hsa-mir-6749-3p ; hsa-mir-4469 ; hsa-mir-4740-3p ; hsa-mir-4714-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-3156-3p ; hsa-mir-188-3p ; hsa-mir-4766-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-4301 ; hsa-mir-3908 ; hsa-mir-4703-5p ; hsa-mir-3942-5p ; hsa-mir-599 ; hsa-mir-1260b ; hsa-mir-1260a ; hsa-mir-3145-3p ; hsa-mir-7855-5p ; hsa-mir-4710 ; hsa-mir-6829-3p ; hsa-mir-4792 ; hsa-mir-6791-3p ; hsa-mir-4299 ; hsa-mir-5193 ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-582-3p ; hsa-mir-6516-5p ; hsa-mir-3678-3p ; hsa-mir-1273h-3p ; hsa-mir-2467-3p ; hsa-mir-6844 ; hsa-mir-141-5p ; hsa-mir-3157-5p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-378a-5p ; hsa-mir-197-3p ; hsa-mir-193b-5p ; hsa-mir-8086 ; hsa-mir-4755-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-4680-5p ; hsa-mir-4635 ; hsa-mir-3653-5p ; hsa-mir-4716-5p ; hsa-mir-1207-5p ; hsa-mir-1302 ; hsa-mir-1911-3p ; hsa-mir-296-3p ; hsa-mir-3122 ; hsa-mir-3153 ; hsa-mir-3179 ; hsa-mir-3616-3p ; hsa-mir-3652 ; hsa-mir-3913-5p ; hsa-mir-3914 ; hsa-mir-3928-3p ; hsa-mir-3936 ; hsa-mir-4298 ; hsa-mir-4425 ; hsa-mir-4430 ; hsa-mir-4436b-3p ; hsa-mir-4468 ; hsa-mir-4632-5p ; hsa-mir-4668-5p ; hsa-mir-4763-3p ; hsa-mir-548ao-3p ; hsa-mir-6077 ; hsa-mir-6081 ; hsa-mir-6721-5p ; hsa-mir-6733-5p ; hsa-mir-6735-5p ; hsa-mir-6739-5p ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6847-5p ; hsa-mir-6879-5p ; hsa-mir-7-5p ; hsa-mir-7843-5p ; hsa-mir-92a-1-5p ; hsa-mir-101-3p ; hsa-mir-1262 ; hsa-mir-1273g-3p ; hsa-mir-4252 ; hsa-mir-4701-3p ; hsa-mir-4793-3p ; hsa-mir-508-5p ; hsa-mir-566 ; hsa-mir-582-5p ; hsa-mir-6512-3p ; hsa-mir-652-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6736-5p ; hsa-mir-6742-3p ; hsa-mir-6776-5p ; hsa-mir-6789-3p ; hsa-mir-6849-3p ; hsa-mir-766-3p ; hsa-mir-7703

Nearest miRNA

hsa-mir-1225/Upstream/4453406; hsa-mir-11401/Downstream/62593;

Nearest TSS

Nearest CpG islands

None/Target, chr16-CpG: 29/Upstream/6504, chr16-CpG: 25/Downstream/81174

Upstream sequence

TGCAGAGGAGATAAGACATCTCAGCAGCGGCTAGGTACTAGCAAGATGGTGGCAACCAACTGGCAAGGCCTTTGCCCTTCTGGAGCCTCCATTTCAATAG

Downstream sequence

AGTAAGGCTTAGAGGGCCAATGCGTATCATAAATGGAAGATAGGAGGACTAGTTTTTAAAAGTTGACTGTTGAATAATGAAATACAGACCAATTAAATAT