Basic Information
VIS ID
TVIS44018021
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q22
Reference genome
GRCh37/hg19
Start
51199710/53122349 (Hg38)
End
51199710/53122349 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/2353619; hsa-mir-1250/Downstream/3768921;
Nearest TSS
ENST00000595228/Upstream/136829; ENST00000268919/Downstream/700552;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/963475, chr17-CpG: 17/Downstream/634940
Nearby gene
C17orf112(No orient, 134698)
Upstream sequence
taagtatttgtccaccaaaacaccttcagaaaacacatccagaataatgcttgaccaaatatctgggcaccccatagcccattcaagtttgcacataaat
Downstream sequence
ttaactaccacaGGATTAATAATGGCATGATTACTTTTCACAATAAACAGTTTGGTATGATTTCTGATAATTTCTAACTATAGAAATGGCCTTTTAAACA
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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