Basic Information
VIS ID
TVIS44018055
Fusion event
HTLV-1-LOC105371888 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.1
Reference genome
GRCh37/hg19
Start
71931975/73935836 (Hg38)
End
71931975/73935836 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105371888
Nearest miRNA
hsa-mir-10226/Upstream/4836180; hsa-mir-1250/Downstream/812777;
Nearest TSS
ENST00000595228/Upstream/23958; ENST00000528433/Downstream/177063;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/33555, chr17-CpG: 76/Downstream/16503
Nearby gene
LINC00469(-107299) ;
Upstream sequence
CTCTCCTCTGTCCTCCACCCATAACCACTAGAAATTCATGCTAATAGCCTAGTAGGGATCCTTCCACATTTTTCTTCATGATCATATTATCCTGTATAAA
Downstream sequence
TATATACATACACACACTACATGTGGTAGACATGTATGTACATACATGTATGTAACTTTTTATACACACCCACAtgcattcacttatacacatgtgtgca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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