Basic Information
VIS ID
TVIS44018066
Fusion event
HTLV-1-BAIAP2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
79023737/81049937 (Hg38)
End
79023737/81049937 (Hg38)
Orient
-
Location type
Intronic
Target gene
BAIAP2
miRNAs that regulate target gene
hsa-mir-455-3p
Nearest miRNA
hsa-mir-10226/Upstream/630444; hsa-mir-1250/Downstream/75339;
Nearest TSS
ENST00000595228/Upstream/13934; ENST00000574688/Downstream/3425;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/13975, chr17-CpG: 22/Downstream/2306
Upstream sequence
GGAAGTGGAGGCGGGACTGGAGTGTATGCCCCACAGTGGGCTCTCCTCAGGCTGGGGACTTCCACACGGGCCCACTGGGTCAGGATGGCCCGTGCCTGTG
Downstream sequence
TTCTAGGATAATGGGATGGACTGGTTCGGAGGCTCAGAGAGACGCCTGACCAGACGCCTGACTGGAGATGGTCTCCCAGCAGAGGGGCTGGGCTCTTCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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