Basic Information
VIS ID
TVIS44018069
Fusion event
HTLV-1-chr17 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr17
Cytoband
q25.3
Reference genome
GRCh37/hg19
Start
80607510/82649634 (Hg38)
End
80607510/82649634 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10226/Upstream/412906; hsa-mir-4525/Downstream/18599;
Nearest TSS
ENST00000595228/Upstream/1081; ENST00000571482/Downstream/7247;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/1186, chr17-CpG: 17/Downstream/14331
Nearby gene
WDR45B(No orient, 1099)
Upstream sequence
CCCCCCAGAGGACACACAGCCCCCCCACGACACAGCCCATAGAGGACACAACCCCTTAGTACCCCACCTAAAGGACAGGTGGCCCTCACACAGCACAGCC
Downstream sequence
CCCGCAGGACTCCGGGACCCTCAGGTCACATTGCTCACAGGGCACAGTTCTCAACTCTTAGGGTCAGGCTGCTGGGGGCATCCTGGTCACAGAGCTTTGT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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