Basic Information
VIS ID
TVIS44018080
Fusion event
HTLV-1-chr18 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
13924859/13924860 (Hg38)
End
13924859/13924860 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3976/Upstream/313660; hsa-mir-1-2/Downstream/905306;
Nearest TSS
ENST00000575820/Upstream/9153; ENST00000591211/Downstream/165075;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/55833, chr18-CpG: 33/Downstream/207141
Nearby gene
RPL36AP49(-4880) ;
Upstream sequence
TTATTCTCATTGGGCCAGAGGAAAACAGAACATTCTTTTAAACAAAGACACCTGTCCAAGAAAAATACCTCTTTACTTGATTTTCTGGAGcagtgatttt
Downstream sequence
cacagtgtggtcagcagacaagcagctggaggatcgcctgCACATGCATAGGACAGCAGCAGACCGGCGGTCAGAACTGGGGTGTGGGTGGGGGACCGCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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