Basic Information
VIS ID
TVIS44018149
Fusion event
HTLV-1-LOC105371980 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr18
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
9409780/9409782 (Hg38)
End
9409780/9409782 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105371980
Nearest miRNA
hsa-mir-3976/Upstream/3035357; hsa-mir-1-2/Downstream/1349802;
Nearest TSS
ENST00000575820/Upstream/74932; ENST00000577221/Downstream/64224;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/74421, chr18-CpG: 105/Downstream/65024
Nearby gene
TWSG1(+7362) ;
Upstream sequence
aattataaaatatctttgtctctagtagcaattagtaccttaaaaactattttgtttgatattagtataaccacttcagctctcttttgtttactctttg
Downstream sequence
catggtatgtctttttatatcttcttacttttaacctatttatatctttgactctaaagtgtatctcttgtgggcaccatatggttggatcatgttttct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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