Basic Information
VIS ID
TVIS44018161
Fusion event
HTLV-1-APC2 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
1471972/1471973 (Hg38)
End
1471972/1471973 (Hg38)
Orient
-
Location type
UTR3
Fragile sites / regions
FRA19B
Target gene
APC2
miRNAs that regulate target gene
hsa-mir-505-5p ; hsa-mir-3194-5p ; hsa-mir-4679 ; hsa-mir-4722-5p ; hsa-mir-4677-3p ; hsa-mir-6874-3p ; hsa-mir-6858-3p ; hsa-mir-148b-5p ; hsa-mir-148a-5p ; hsa-mir-6785-3p ; hsa-mir-3648 ; hsa-mir-4632-3p ; hsa-mir-4290 ; hsa-mir-4758-3p ; hsa-mir-361-3p ; hsa-mir-6849-3p
Nearest miRNA
hsa-mir-1302-11/Upstream/658320; hsa-let-7e/Downstream/344186;
Nearest TSS
ENST00000633603/Upstream/13393; ENST00000591735/Downstream/4512;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/731, chr19-CpG: 23/Downstream/963
Upstream sequence
CACTGCTGCTTCTCTGAATGCATGTCACGCTGCACCCCATGCTCCGGGCCCACACCCTGCAGGACAAGGAGCTCCAGACAGGACGTCCATAAGTCACCGA
Downstream sequence
GGTGTGCCACCCAGCAGGTGCTGGAGGTGCCCAATGCTCCCTCCTAGGACCTCGCAGCCAGGCAAGGCTGTCAGGTTGTTTTGGGGGAAGAGGGGGTCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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