Basic Information
VIS ID
TVIS44018177
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
p12
Reference genome
GRCh37/hg19
Start
22509310/22326508 (Hg38)
End
22509310/22326508 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/1927154; hsa-let-7e/Downstream/12796192;
Nearest TSS
ENST00000633603/Upstream/40100; ENST00000599129/Downstream/95838;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/39623, chr19-CpG: 69/Downstream/191086
Nearby gene
ZNF729(+9332) ;
Upstream sequence
ctcagcatacctgtaaggctgtgactaaggagacacagtccacaaaagtgattgaggctctcatgcacgattccagtccaccattgagattgtgactcct
Downstream sequence
gtatttagacataacatacaagaggtgttgactcttgtacctggaaccaacacacgtgccaaattcttttcttttttctttctttttttttttttgagac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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