Basic Information
VIS ID
TVIS44018195
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
38720623/38229983 (Hg38)
End
38720623/38229983 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/2884356; hsa-let-7e/Downstream/1179640;
Nearest TSS
ENST00000633603/Upstream/269; ENST00000590510/Downstream/14052;
Nearest CpG islands
chr19-CpG: 141/Target, None/Upstream, None/Downstream
Nearby gene
DPF1(-269) ;
Upstream sequence
GGATACAGGGAGGGGCGGGGCTCCCCCCAGAGCATCTTTCCTCCCTCCCTGGGAGTGCTCGGTCTCCAACTCGGGATCTCCACCCTCCAGGCACCGCGGG
Downstream sequence
CGCGGAAGCAGGTGGTCCCTAGCTTCTAGATGTCCCCAGGGTATGTGGATGACCCTAGGGTCTGTCGTGTATTCTTGTCTAGGCCTATTTGGGTGTCTCT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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