Basic Information
VIS ID
TVIS44018200
Fusion event
HTLV-1-chr19 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
41274341/40768436 (Hg38)
End
41274341/40768436 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-mir-10395/Upstream/398529; hsa-let-7e/Downstream/1101191;
Nearest TSS
ENST00000633603/Upstream/4895; ENST00000597600/Downstream/3212;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/17107, chr19-CpG: 46/Downstream/9539
Nearby gene
SNRPA(+3044) ;
Upstream sequence
tccaactcctgacctggtgatctgcctgccttggcctccaaaagtgctgggattacaggtgtgagccaccgcgcccggGCtttttttttttcttttttga
Downstream sequence
gacagagcctcactctgtcacccaggctggagtgcaatggcatgatcttggctcactgcaacctccgcctcctgggttcaagcaattctcctgtctcagc
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate