Basic Information
VIS ID
TVIS44018213
Fusion event
HTLV-1-MED25 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr19
Cytoband
q13.33
Reference genome
GRCh37/hg19
Start
50341656/49838399 (Hg38)
End
50341656/49838399 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA19A
Target gene
MED25
miRNAs that regulate target gene
hsa-mir-21-3p ; hsa-mir-324-3p ; hsa-let-7b-5p
Nearest miRNA
hsa-mir-10395/Upstream/6300; hsa-let-7e/Downstream/16192;
Nearest TSS
ENST00000633603/Upstream/3341; ENST00000596095/Downstream/12336;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/19894, chr19-CpG: 191/Downstream/12134
Nearby gene
PTOV1-AS1(No orient, 247)
Upstream sequence
acacacgcacacacacaaaatctgcagtcttggcttcttttgacaagtcagaagaattggcacccctgggcccgcccttctgcctggcaacaatgggctg
Downstream sequence
gagctgcccctctccatggggcgtgtgctttctggttcgccacagtccccaccactccctcttggcttccctgtgaggcagagagtcactgcctttgtca
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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