Basic Information
VIS ID
TVIS44018241
Fusion event
HTLV-1-CFAP61 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
20333783/20353139 (Hg38)
End
20333783/20353139 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA20A
Target gene
CFAP61
Nearest miRNA
hsa-mir-103a-2/Upstream/1882448; hsa-mir-1-1/Downstream/5855047;
Nearest TSS
ENST00000382410/Upstream/62837; ENST00000310227/Downstream/14982;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/300312, chr20-CpG: 140/Downstream/10617
Upstream sequence
aaaacaaatgacctgatataaacataagcaaaggacctgaatagacacttctcaaaagaagacatacagtaggtccttgaataacatcctttcgttgtaa
Downstream sequence
cattgatgaggaaaacaaagtcattcccgggccactgtctgtggagtttgcatgttctgcccatgtctgtgtgcattgtgggttttcaccaggtacactg
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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