Basic Information
VIS ID
TVIS44018273
Fusion event
HTLV-1-chr20 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr20
Cytoband
q13.31
Reference genome
GRCh37/hg19
Start
55191948/56616892 (Hg38)
End
55191948/56616892 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-103a-2/Upstream/2548407; hsa-mir-1-1/Downstream/704610;
Nearest TSS
ENST00000382410/Upstream/20582; ENST00000416606/Downstream/12410;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/148182, chr20-CpG: 490/Downstream/8331
Nearby gene
TFAP2C(+12410) ;
Upstream sequence
GCCACACCCTTCCCTTTCCTGCCCCTTGGCTTCGTGTTAGGATCTCCTTCTTCCATCCTCCCCAGTTCCAAAGTCAGCTGTTCAGTCCAGCCTGACGGTG
Downstream sequence
CAGTCCAGCTGTTGGGAACCCCTAGCTAGCCTAGCCCCTCCCCAGGCTGTGTTACAGACACGCACAGCCACGTGGCTCCCTGGCCTCTGCTGAAGCCTTT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate