Basic Information
VIS ID
TVIS44018306
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
21963187/20590874 (Hg38)
End
21963187/20590874 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/1904710; hsa-mir-155/Downstream/2488410;
Nearest TSS
ENST00000624081/Upstream/332054; ENST00000486367/Downstream/212189;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/2345317, chr21-CpG: 89/Downstream/406231
Nearby gene
LINC00320(-151721) ;
Upstream sequence
taacgaaagaagaaaaacaaagacatatttatagattttgttatagcaacccttttatttactgtttcttgctctcttcatttcttgtggatttgagcta
Downstream sequence
ctaactagtgtcatttgtttgtgccaatacagcttttttttcactcaactgttttatgctgttattggcaaatgtattacatttctaaaagttataggtt
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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