Basic Information
VIS ID
TVIS44018314
Fusion event
HTLV-1-chr21 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
27641722/26269403 (Hg38)
End
27641722/26269403 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/695359; hsa-mir-3197/Downstream/684558;
Nearest TSS
ENST00000624081/Upstream/98275; ENST00000452460/Downstream/81231;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/98513, chr21-CpG: 61/Downstream/303288
Nearby gene
APP(-98276) ;
Upstream sequence
CTAGGGATAAATGTAGGAGATGGAGGAAAGGGGAGTTGCCGTTTTATTGGTGCCACTGTTTAGTTAAAATACCTAAAACATTTTCTCATTCCCCTTTTTC
Downstream sequence
CTGCCTCCACTGCCTTTGGATGTAGATTTATTCTGGAGTTCTGTTGGGAAAACACACTATTTTGGAATGTTTTACTTGTCTACTGAGAGGGTTCTTCGGC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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