Basic Information
VIS ID
TVIS44018359
Fusion event
HTLV-1-chr22 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
27638415/27242454 (Hg38)
End
27638415/27242454 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1286/Upstream/687131; hsa-let-7a-3/Downstream/678071;
Nearest TSS
ENST00000624155/Upstream/17727; ENST00000449126/Downstream/33786;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/485284, chr22-CpG: 16/Downstream/196010
Nearby gene
LINC01422(No orient, 321842)
Upstream sequence
cctcatctgtaaaatgggacctatcctgaaggtttgcctggagggttgaaaagagatgacagtgaaggcgcataggtttacatggggactggcatattga
Downstream sequence
gtatgcTGGAAAGAAGGCCCTTCTTCCTCCTCTGCTTCTTTTTGGCTTCTCTCTTGGTTCTTGCCTCATTATTCCAGGTCCTTACAACTACTGATCTTCC
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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