Basic Information
VIS ID
TVIS44018365
Fusion event
HTLV-1-DEPDC5 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr22
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
32221558/31825572 (Hg38)
End
32221558/31825572 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA22B
Target gene
DEPDC5
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-331-3p
Nearest miRNA
hsa-mir-1286/Upstream/204041; hsa-let-7a-3/Downstream/1611010;
Nearest TSS
ENST00000624155/Upstream/6506; ENST00000462414/Downstream/8277;
Nearest CpG islands
None/Target, chr22-CpG: 279/Upstream/71494, chr22-CpG: 131/Downstream/118498
Upstream sequence
GTGTGTCCACCTGATGGACCTCTCTGCTCAGATGGCCCCCAAGTACCTCATCCTTAATGCATTGACAGCCAAACTCATGTCTCCCTGTTCCTCAGCCCAT
Downstream sequence
GCTTCCTCTTCCACTCCTTCTTCTGATTGGctcctcacctccgttctcactgcattgttcagactcctgtcatttgtggccaggattattgcagtagcct
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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