Basic Information
VIS ID
TVIS44018412
Fusion event
HTLV-1-chrX integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
128283949/129149972 (Hg38)
End
128283949/129149972 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/7778919; hsa-mir-105-1/Downstream/5019406;
Nearest TSS
ENST00000429181/Upstream/549504; ENST00000486673/Downstream/373274;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/2568634, chrX-CpG: 50/Downstream/372902
Nearby gene
SMARCA1(-296529) ;
Upstream sequence
ATTAGGATGATTGAACAGAAGTCAATTGAACCAGTAAGCTATTGCTAGTAAAGAAAAAGAAATAAACAAAACCACCTCAAACTCAGTATTTTAAAGAACA
Downstream sequence
TCTTTCATTGTCATTCATTAATCTGCAGATTGGCAAGAGGTTGGCTGATCTAGGCTGGGTTTGGCTTGGCCAGCAGTTCTACTTCAGGCTGCATGTCCAT
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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