VISDB Viral Integration Site DataBase

VIS ID

TVIS44018416

Fusion event

HTLV-1-TRAPPC2 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chrX

Cytoband

p22.2

Reference genome

Start

End

13744996/13726877 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-21-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-6834-5p ; hsa-mir-340-5p ; hsa-mir-4693-5p ; hsa-mir-542-3p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-3120-5p ; hsa-mir-7162-3p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-5584-5p ; hsa-mir-651-3p ; hsa-mir-6507-5p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-548ah-5p ; hsa-mir-3609 ; hsa-mir-7703 ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-4252 ; hsa-mir-3128 ; hsa-mir-4793-3p ; hsa-mir-766-3p ; hsa-mir-8073 ; hsa-mir-221-5p ; hsa-mir-6849-3p ; hsa-mir-1273g-3p ; hsa-mir-508-5p ; hsa-mir-1227-3p ; hsa-mir-6889-3p ; hsa-mir-5003-5p ; hsa-mir-596 ; hsa-mir-665 ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-1827 ; hsa-mir-432-5p ; hsa-mir-6078 ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-7977 ; hsa-mir-6769b-5p ; hsa-mir-6769a-5p ; hsa-mir-6134 ; hsa-mir-7854-3p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-383-3p ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-873-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-4797-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-6840-3p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-25-5p ; hsa-mir-30b-3p ; hsa-mir-3192-5p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-4728-5p ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-658 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p

Nearest miRNA

hsa-mir-3690-1/Upstream/136531; hsa-let-7f-2/Downstream/2900135;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/37558, chrX-CpG: 77/Downstream/7445

Upstream sequence

gactaaatgctccaattaaaagacacagactggcaaactggataaagaatcaagacccatcagtgtgctgtattcaggaaacccatctgatgtgcaaaga

Downstream sequence

cacacataggctcaaaataaagggatggaggaagatctaccaagcaaatggaaagcacaaaaaagcaggggttgcaatcctggtttctgataaaacagac