Basic Information
VIS ID
TVIS44018446
Fusion event
HTLV-1-LINC01284 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
50876380/51133545 (Hg38)
End
50876380/51133545 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LINC01284
Nearest miRNA
hsa-mir-1587/Upstream/1118862; hsa-let-7f-2/Downstream/1203012;
Nearest TSS
ENST00000429181/Upstream/222761; ENST00000376006/Downstream/37855;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/319366, chrX-CpG: 81/Downstream/199083
Upstream sequence
gtgaacagaggagctctctgacagtgtggATGTTTAAGCCCAGTCTTACTGTCTATTTCTTGAAAGATCCAACtagtacaaggaccggattggaaaatac
Downstream sequence
atgcaaagataggatctggaactggttcatctacttctctgcaggcaaagagaatggcatcctgaatcatgggtcaggcacataacataagatggtgtga
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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