Basic Information
VIS ID
TVIS44018461
Fusion event
HTLV-1-MIR325HG integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrX
Cytoband
q21.1
Reference genome
GRCh37/hg19
Start
76172805/76952380 (Hg38)
End
76172805/76952380 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
MIR325HG
Nearest miRNA
hsa-let-7f-2/Upstream/33020; hsa-mir-105-1/Downstream/53024;
Nearest TSS
ENST00000429181/Upstream/524656; ENST00000439435/Downstream/61903;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/523240, chrX-CpG: 71/Downstream/495089
Upstream sequence
caggaccaaattcacacataataatattaaccttaaatgtaaatgggctaaatgctccaattaaaagacacagactggaaaactggataaagagtcaaga
Downstream sequence
cccatcagtgtgctgtattcaggaaacccatcccatgtgcagagacacacacaggctcaaaataaagggatggaggaagatctaccaagcaaatggaaaa
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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