Basic Information
VIS ID
TVIS44018477
Fusion event
HTLV-1-ASS1P6 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chrY
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
14044157/11923451 (Hg38)
End
14044157/11923451 (Hg38)
Orient
-
Location type
Intronic
Target gene
ASS1P6
Nearest miRNA
hsa-mir-3690-2/Upstream/7317223; hsa-mir-12120/Downstream/1555726;
Nearest TSS
ENST00000430575/Upstream/2012653; ENST00000417071/Downstream/738883;
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/133688, chrY-CpG: 68/Downstream/30082
Upstream sequence
ACCTTAATCTGGGGGCCAGTGAGCAGGTGAGCTCAAACTGGACCTGATCGTTCTCCTTTCCCATGATGCCATAGGATACGTACTTGGCCCCCTCCTGCTG
Downstream sequence
GGTAATTTCCACTTGTTTGTGGGCGATGCAGAGCCTAGCCAGAGAGGTGCCCAGGAGGTAGTAGTCCTCATACAGGGCGCTGGACTGGATGGCCGGCCAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
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