Basic Information
VIS ID
TVIS44018491
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
104570644/104028022 (Hg38)
End
104570644/104028022 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/3746714; hsa-mir-11399/Downstream/3869201;
Nearest TSS
ENST00000473358/Upstream/277616; ENST00000635102/Downstream/1577981;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/501731, chr1-CpG: 37/Downstream/2052749
Nearby gene
LOC100129138(+45001) ;
Upstream sequence
ACCAAGTTAAGCTGACTCTTTAGGGATCTAAGATATGGTAACACCAATCATGTTAGTAGATAAATGatatattcatatatattatatatatataatttat
Downstream sequence
aGAGTAAGGGTCAAATAATGCACATTCATGTAAACCATTTTCAGACTATCTTCAAGATACGACTTTTCTCTTTGAAATCTAAAATCATCCATGCTGagac
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate