Basic Information
VIS ID
TVIS44018493
Fusion event
HTLV-1-chr1 integration
Validated
No
Detection method
HTS
Data source
download(RID)
Sample type
Nontumor
Disease
HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)
Quality evaluation
Normal
Reported year
2017
PubMed ID
29186194
Virus Sequence
Virus name
HTLV-1
Reference genome
Not given
Host Sequence
Chromosome
chr1
Cytoband
p21.1
Reference genome
GRCh37/hg19
Start
105879567/105336945 (Hg38)
End
105879567/105336945 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-101-1/Upstream/5055637; hsa-mir-11399/Downstream/2560278;
Nearest TSS
ENST00000473358/Upstream/1586539; ENST00000635102/Downstream/269058;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1810654, chr1-CpG: 37/Downstream/743826
Upstream sequence
AAAAAACAAAAGAAAATAATAGCAAAACATAGGAGGCTATACAATAAAGtaatattataaaattttgaaaaattttaataaattatGAAGATGAGAGTAG
Downstream sequence
ATTGTATGACAAGCAATGTACATGTACATAATGACAATATGCACAAATGTATCCTCTGATTTAATTTTCATACAACTCTAGGAAGTATCATACTTTATAG
Reference
Furuta, R., et al.Human T-cell leukemia virus type 1 infects multiple lineage hematopoietic cells in vivo. PLoS Pathog,2017,13(11): e1006722.
Curate