VISDB Viral Integration Site DataBase

VIS ID

TVIS44018500

Fusion event

HTLV-1-FAM102B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

109129037/108586415 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-302a-3p ; hsa-mir-302b-3p ; hsa-mir-302c-3p ; hsa-mir-302d-3p ; hsa-mir-372-3p ; hsa-mir-373-3p ; hsa-mir-520e ; hsa-mir-520f-3p ; hsa-mir-519c-3p ; hsa-mir-520a-3p ; hsa-mir-519b-3p ; hsa-mir-520b ; hsa-mir-520c-3p ; hsa-mir-520d-3p ; hsa-mir-519a-3p ; hsa-mir-532-5p ; hsa-mir-636 ; hsa-mir-302e ; hsa-mir-3163 ; hsa-mir-1273e ; hsa-mir-4477a ; hsa-mir-29a-3p ; hsa-mir-95-5p ; hsa-mir-29b-3p ; hsa-mir-3065-3p ; hsa-mir-3668 ; hsa-mir-218-5p ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-3651 ; hsa-mir-548c-3p ; hsa-mir-4482-3p ; hsa-mir-7159-3p ; hsa-mir-5585-3p ; hsa-mir-4312 ; hsa-mir-1250-3p ; hsa-mir-3662 ; hsa-mir-629-3p ; hsa-mir-620 ; hsa-mir-1270 ; hsa-mir-4531 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-4683 ; hsa-mir-1287-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-7113-3p ; hsa-mir-4469 ; hsa-mir-5088-3p ; hsa-mir-1206 ; hsa-mir-4659b-5p ; hsa-mir-4659a-5p ; hsa-mir-891a-3p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-376a-2-5p ; hsa-mir-3935 ; hsa-mir-139-3p ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-873-3p ; hsa-mir-6817-5p ; hsa-mir-5002-3p ; hsa-mir-4769-3p ; hsa-mir-4254 ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-5582-5p ; hsa-mir-576-3p ; hsa-mir-124-3p

Nearest miRNA

hsa-mir-101-1/Upstream/689111; hsa-mir-11399/Downstream/1012478;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/25825, chr1-CpG: 84/Downstream/74556

Upstream sequence

tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtAATGCCATTTAATTTAGTAAGTTTTTATAAGCATTTTAGATCCAGACAACATATGTTTACC

Downstream sequence

AATTTGTACCTAACTATAAAACATTTCATAAGAGGAAATTTATACAGAGGAGAATAATTACAAATTACTTTCAACATCCCTTCAGTGTTGAAATTAAACT