VISDB Viral Integration Site DataBase

VIS ID

TVIS44018502

Fusion event

HTLV-1-CLCC1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.3

Reference genome

Start

End

109493142/108950520 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-15a-5p ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6880-5p ; hsa-mir-6499-3p ; hsa-mir-508-3p ; hsa-mir-6086 ; hsa-mir-377-5p ; hsa-mir-4537 ; hsa-mir-5186 ; hsa-mir-3192-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-7856-5p ; hsa-mir-3658 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-6128 ; hsa-mir-4307 ; hsa-mir-619-3p ; hsa-mir-323a-3p ; hsa-mir-33a-3p ; hsa-mir-5197-5p ; hsa-mir-649 ; hsa-mir-6864-3p ; hsa-mir-3672 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-665 ; hsa-mir-887-5p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-7160-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-4768-3p ; hsa-mir-5690 ; hsa-mir-6500-3p ; hsa-mir-3614-5p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-34b-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30c-5p ; hsa-mir-30a-5p ; hsa-mir-30b-5p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-3675-3p ; hsa-mir-4293 ; hsa-mir-4684-5p ; hsa-mir-6771-3p

Nearest miRNA

hsa-mir-101-1/Upstream/1053216; hsa-mir-11399/Downstream/648373;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/73104, chr1-CpG: 68/Downstream/12539

Upstream sequence

AGCAAAGAACACAGCATCCTGTATAAGGCTAAAACaatttttaatatatataatgaaatagaattatttttttaaataaattGGGTTTTGGGttattatt

Downstream sequence

attattattattatttttagagacagggtcttgctctattgcccaggctggagtacagtgatacaatcacagctcagtgcatcctccaactcctgggctc