VISDB Viral Integration Site DataBase

VIS ID

TVIS44018512

Fusion event

HTLV-1-RSBN1 integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

p13.2

Reference genome

Start

End

114354164/113811542 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-16-2-3p ; hsa-mir-195-3p ; hsa-mir-218-5p ; hsa-mir-552-5p ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-5003-5p ; hsa-mir-3973 ; hsa-mir-410-3p ; hsa-mir-338-5p ; hsa-mir-3529-3p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-25-3p ; hsa-mir-3152-5p ; hsa-mir-4774-3p ; hsa-mir-643 ; hsa-mir-129-5p ; hsa-mir-2053 ; hsa-mir-569 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-548s ; hsa-mir-4666b ; hsa-mir-5011-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-3926 ; hsa-mir-138-1-3p

Nearest miRNA

hsa-mir-101-1/Upstream/929413; hsa-mir-1182/Downstream/2748482;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/51892, chr1-CpG: 85/Downstream/209

Upstream sequence

CTTGCAGAATTTGAAAACAAATGCTGAGAGGCTCCGGGGGACCGGTAAAGGGATTAGCAACTGACAGCTCGGCCTCGGAGCGAGAAGCCTCAAGTAGTTA

Downstream sequence

GATCAAACCGTGTCAACGATCTGAAATCCAGGGTCCACCCCAGTGAGCTTAGAGAAGTACAGCAGCAGAAGGTAAGCAGGGGTTTGGCGTCTTTCAGTCC