VISDB Viral Integration Site DataBase

VIS ID

TVIS44018547

Fusion event

HTLV-1-ZBTB7B integration

Validated

No

Detection method

HTS

Data source

download(RID)

Sample type

Disease

HTLV-1 associated myelopathy/tropical spastic paraparesis (HAM/TSP)

Quality evaluation

Normal

Reported year

2017

PubMed ID

Virus name

HTLV-1

Reference genome

Not given

Chromosome

chr1

Cytoband

q21.3

Reference genome

Start

End

154988006/155015530 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-1226-3p ; hsa-mir-106b-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-130a-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-454-3p ; hsa-mir-301b-3p ; hsa-mir-1910-3p ; hsa-mir-4295 ; hsa-mir-3666 ; hsa-mir-3714 ; hsa-mir-4671-3p ; hsa-mir-4708-3p ; hsa-mir-6511a-5p ; hsa-mir-3179 ; hsa-mir-4650-5p ; hsa-mir-1972 ; hsa-mir-6783-5p ; hsa-mir-6876-5p ; hsa-mir-4476 ; hsa-mir-4632-3p ; hsa-mir-6755-5p ; hsa-mir-4281 ; hsa-mir-6825-5p ; hsa-mir-6785-5p ; hsa-mir-6883-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-6090 ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-8072 ; hsa-mir-3960 ; hsa-mir-6133 ; hsa-mir-6130 ; hsa-mir-6129 ; hsa-mir-6127 ; hsa-mir-4510 ; hsa-mir-4419a ; hsa-mir-6889-5p ; hsa-mir-6777-5p ; hsa-mir-5587-3p ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-4290 ; hsa-mir-4707-3p ; hsa-mir-18a-3p ; hsa-mir-6752-3p ; hsa-mir-2276-5p ; hsa-mir-7108-3p ; hsa-mir-1468-3p ; hsa-mir-3065-3p ; hsa-mir-3180-3p ; hsa-mir-3180 ; hsa-mir-3196 ; hsa-mir-3202 ; hsa-mir-338-3p ; hsa-mir-3936 ; hsa-mir-4467 ; hsa-mir-4530 ; hsa-mir-500b-3p ; hsa-mir-548aj-5p ; hsa-mir-548aw ; hsa-mir-548f-5p ; hsa-mir-548g-5p ; hsa-mir-548x-5p ; hsa-mir-5702 ; hsa-mir-615-5p ; hsa-mir-6770-3p ; hsa-mir-6798-5p ; hsa-mir-6816-5p ; hsa-mir-6820-5p ; hsa-mir-6871-3p ; hsa-mir-885-3p ; hsa-mir-937-5p

Nearest miRNA

hsa-mir-101-1/Upstream/39747; hsa-mir-1182/Downstream/179647;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/11470, chr1-CpG: 126/Downstream/34982

Upstream sequence

CACAGGAACTGCCTCCCCTCCTGAGGGTCCCCAGAGCTACGAACCCTATGAGGGTGAGGAAGAAGAAGAGGAGCTGGTATATCCCCCAGCCTATGGGCTG

Downstream sequence

GCGCAGGGTGGCGGGCCCCCGCTGTCCCCAGAGGAGCTGGGCTCAGATGAGGATGCCATCGATCCTGACCTGATGGCCTACCTAAGCTCCCTGCACCAGG